single-cell genomics

Multimodal Pooled Genetic Screens Integrating Transcriptomics and Image-Based Phenotypes

Special seminar on PerturbPair, a multimodal platform combining Perturb-Seq and optical pooled screening to map cellular responses to genetic perturbations.

Modeling Complex System Dynamics with Flow Matching Across Time and Conditions

Talk on Multi-Marginal Flow Matching (MMFM) for modeling system dynamics from temporal snapshot data.

Causal Networks and Applications to Molecular Biology

Overview talk on the barriers and opportunities for causal graph discovery in single-cell and molecular biology.

Cross-Modality Matching and Prediction of Perturbation Responses with Labeled Gromov-Wasserstein Optimal Transport

Labeled Gromov-Wasserstein optimal transport for predicting cellular responses to perturbations across modalities.

Large-Scale Differentiable Causal Discovery of Factor Graphs

Scalable causal discovery for high-dimensional and biological data.

Variational Autoencoders for Single-Cell Genomics

Applications of variational autoencoders to single-cell biology and the foundations behind scVI.